Hi all.
I am analyzing the human nasopharynx flora following the mothur SOP for 454, and I was wondering how I could classify the sequences the unclassified sequences that have a confident score below my threshold? I am interesting in potential pathogens that I haven't been able to identify using different taxonomy datasets: greengens, RDP ( don't get the sp level), homd database...
Thanks a lot in advance
I am analyzing the human nasopharynx flora following the mothur SOP for 454, and I was wondering how I could classify the sequences the unclassified sequences that have a confident score below my threshold? I am interesting in potential pathogens that I haven't been able to identify using different taxonomy datasets: greengens, RDP ( don't get the sp level), homd database...
Thanks a lot in advance