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unclassified sequences using homd taxonomy

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  • unclassified sequences using homd taxonomy

    Hi all.

    I am analyzing the human nasopharynx flora following the mothur SOP for 454, and I was wondering how I could classify the sequences the unclassified sequences that have a confident score below my threshold? I am interesting in potential pathogens that I haven't been able to identify using different taxonomy datasets: greengens, RDP ( don't get the sp level), homd database...

    Thanks a lot in advance
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