Help for output of samtools pile up

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baby1885

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Join Date: Jan 2010

Posts: 13
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#1

Help for output of samtools pile up

04-02-2010, 07:54 PM

chr10 1088075 t W 2 2 60 2 ,$n aD

I have an question about output of samtools pileup,IN row 8 I'am get that it mean one base is T,but what means by "n" when the query genetype "W"? is that "n" mean that locus just as a gap or others ?can you help me !

Last edited by baby1885; 04-03-2010, 09:59 PM.
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dagarfield

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Join Date: Aug 2010

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#2

01-18-2011, 01:28 PM

Try here

Pileup Format

http://samtools.sourceforge.net/pileup.shtml
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