Analyzing IonTorrent data

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jobinjkattoor

Junior Member

Join Date: Feb 2023

Posts: 1
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#1

Analyzing IonTorrent data

02-05-2023, 10:53 PM

Hi,
I am new here. I have been working with Ion torrent for the last one year. But I generally use Geneious prime software for my regular analysis, and I would like to use analysis tools like Kraken2 and similar tools to find bacterial contamination in my sample results. Can anyone help me find where to read about this, or does anyone have any links from which I can have a user interface of Kraken2? I am not a tech wiz and am not good with command-line tools.

Thanks in advance.
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Ben3

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Join Date: Sep 2022

Posts: 64
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#2

02-14-2023, 12:40 PM

Hey jobinjkattoor, what sort of questions did you have about Kraken 2? They do have some additional info on this GitHub page you could check out.

I'm not an expert on Kraken 2 but maybe I could point you in the right direction.
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