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  • Import a BAM file into SMRT Link

    Hello everyone,

    I just sequenced bacterial genomes by PacBio Sequel. Compared to the RS II technology, I received a BAM file from the sequencing platform. I would like to import my sequencing data into SMRT Link, but I see that I need an XML file (the platform does not seem to be able to give me this file). Is there a way to generate this file or another way to integrate my data into SMRT Link?

    Thank you

  • #2
    A service provider should be providing a xml file that can be used for import into SMRT Link.
    You can generate a dataset xml using `dataset create` but it isn't ideal as you may be missing some required metadata.

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