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ndsimons

Junior Member

Last Activity: 01-05-2023, 04:02 PM

Joined: 12-28-2022

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ndsimons replied to count reads spanning multiple variants from BAM file

in Bioinformatics

01-05-2023, 04:02 PM
For posterity:
import argparse
import pysam
import os

# Define the command-line arguments
parser = argparse.ArgumentParser()...

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ndsimons started a topic count reads spanning multiple variants from BAM file

in Bioinformatics

12-28-2022, 04:50 PM
count reads spanning multiple variants from BAM file

Hello, I have a BAM and a phased VCF for a sample and my goal is to count how many individual reads (not one variant covered by a read and other variant...

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