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Sequence Alignment Algorithms, Biological Constants and Substitution Matrices
Over the past year, I've spent a great deal of time working on several packages related to bioinformatics. Of those packages, the two that I believe have... -
Virtual Workshop: Introduction to Python for Bioinformatics
Introduction to Python for Bioinformatics
Feb. 28, 2022, 2 p.m. - March 4, 2022, 5 p.m. PST
Organizer - UC Davis Bioinformatics Core... -
Adding Features to a GenBank File - Any Help?
Hi all!
I'm currently working with a multi entry genbank file and two dataframes in order to add new qualifiers to the genbank file via... -
synonymous substitution rates from OrthoFinder orthogroups
Hi all,
I'm trying to calculate synonymous substitution rates to date whole-genome duplications. I understand how to calculate synonymous... -
Immediate openings for multiple post-doc positions @ WashU in St. Louis MO
Full listing here, multiple positions available: https://openwetware.org/wiki/HughesLab:Open_Positions
Postdoctoral Associate in the Department... -
Any Recommendation on Python Course!
Hello Everyone, I am looking for a python course online but I didn't find anyone who is suitable for a fresher point of view. Can anyone here just suggest...Last edited by shivambhatele; 01-29-2020, 12:47 AM. -
ERCC spike-in analysis with python?
Hi!
I have the expression data for RNA samples to which I added ERCC spike-Ins.
I want to do a preliminary analysis*, and I was wondering... -
Script to calculate Dipeptide composition
Hi all, I would like to use a script (python, shell, or perl) to calculate the percentages of dipeptide composition from multiple protein sequences (fasta... -
UMI-tools running error- help needed :)
Hi everyone,
I am trying to work with UMI-tools. After installation, I tried to follow the example they provide.
After executing... -
dineshkumarsrk started a topic How to reverse complement the nuclotides, if the coordinates are in reverse order?in GeneralHow to reverse complement the nuclotides, if the coordinates are in reverse order?
I have the series of coordinates in id.txt file, whose coordinates sequences are in genome.fasta file. The coordinates of id.txt file is shown below,... -
Quick way to QC processed RNA-Seq data
Greetings,
Is there some software/library that will automatically perform a data consistency check and possibly heatmaps on processed RNA-Seq... -
Interested in Machine Learning?
Dear all,
4 weeks left to apply for our Workshop "Introduction to Machine Learning" running ub Berlin this June (3-7): https... -
filter secondary reads in bam with pysam
I am new to python and trying to learn. The below is an attempt to filter out secondary reads in a all bam files in a directory using pysam. I ran mark... -
Introduction to Machine Learning - training course in Berlin
Course: "Introduction to Machine Learning"
When: 3rd-7th June 2019
Registration deadline: 4th May 2019
... -
Rename files that are stored in a list in python
Hi!
I generated a list that contains 3 text files
list = [path/A.txt, path/B.txt, path/C.txt]
Now, I want to remove...Last edited by deKoch13; 03-18-2019, 08:00 AM.
