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edeka · 06-13-2016, 01:42 AM

Hi all!
I have RNA-seq data and I used STAR in order to align the reads.
I would like to use my bed file in order to have the only read...

lre1234 · 12-15-2015, 08:24 AM

Hi all,
Does anyone know where I would be able to get an annotated splice junction file that I could use with STAR? I've been searching for one,...

frymor · 11-18-2015, 02:15 AM

Hi,

I'm trying to run rhe python script for counting the reads for a dexseq analysis.
But I keep getting a strange error I can't...

rv20 · 11-12-2015, 01:29 PM

Hi everyone,
I am having some trouble with creating genome indexes with STAR. I double checked the manual and I am using all the correct...

komalsrathi · 10-08-2015, 11:36 AM

Hi everyone,

I am a new user of STAR Aligner. I have been using GSNAP until now, but my new group likes STAR better. I am very excited about...

frymor · 10-04-2015, 09:20 PM

Hi all,

I am trying to filter un-annotated splice junction from my STAR mapping run, but with no success.
I would like to exclude...

frymor · 09-22-2015, 02:50 AM

Hi everybody,

I am trying to create a junction file from the SJ.out.tab file of the STAR aligner.
I would like to see only those...

cindylanzao · 09-16-2015, 07:32 PM

Hi,all

I am doing RNA-seq alignment with STAR, my workstation is dual core(E5-2620v3), 12 thread in total, 64G RAM. I am running 9 mouse...

frymor · 08-16-2015, 11:07 PM

Hi,

I have a data set with several samples of length 76 and others of read length of 100 bases.

I would like to analyse...

frymor · 08-14-2015, 12:29 AM

Hi,

I have some RNA-Seq from the fruit fly, where we test the differential gene expression of several knock-outs and developmental stages....

frymor · 08-14-2015, 12:23 AM

Hi,

as mentioned here, we are mapping drosophila samples using the STAR aligner. To get an impression of the mapping quality we compared...

WhatsOEver · 07-09-2014, 06:18 AM

Hi everyone,

I have some problems with a recent mapping I did with STAR. I run the following command:

Code:

STAR --runMode

...

nickschurch · 02-20-2014, 03:16 AM

Hi

I know this error has been reported before for previous versions of Tophat2; well, its still happening in 2.0.10. As suggested by the...

dhir_kumar · 12-22-2013, 11:02 PM

Hi,

I am using cuffcompare from cufflinks suite to check and compare the transcriptome assemblies from STAR/cufflinks and TopHat/cufflinks...

huzefa_mehta · 08-29-2013, 01:57 PM

I havent been able to run STAR successfully yet. It exits with a core dump message. Any clues?

Aug 29 20:52:35 ..... Started...

intersect file bam-bed and count read