3rd Annual Training Course on Viral Bioinformatics and Genomics
Course dates: Monday 7th – Friday 11th of August 2017
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Viral Genomics and Bioinformatics course August 2017, Glasgow
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vaxherra started a topic Metagenomic survey of gut microbiota - depth, tradeoff and num. of samples to includein MetagenomicsMetagenomic survey of gut microbiota - depth, tradeoff and num. of samples to include
Hi there community!
I am a student currently enrolled in a Research Traineeship Program. My lab studies Systemic Lupus Erythematosus (SLE),... -
MetaSUB Inter-City Challenge - CAMDA@ISMB/ECCB
Founded in 2015, the MetaSUB International Consortium aims to create the world's only longitudinal metagenomic map of mass-transit systems and other public... -
Partitioning huge paired-end datasets with the khmer suite
The khmer suite has a workflow for partitioning reads based on graph-connectivity, which I want to test for a specific (huge) paired-end dataset.
... -
Oxford Nanopore ‘Wiggle Space’ Challenge
Dear Colleagues,
The Call for Contributions to CAMDA @ISMB/ECCB is now open!
Several gut microbiota samples had their DNA... -
Concentrations of Post-indexed libraries
Hello all
I have been working with microbiome libraries using Illumina's recommended protocol and sequencing the V3-V4 regions. My question... -
21,000 Human Microbiome Dataset Collection
21,000 Human Microbiome Dataset Collection
Repositive announce launch of microbiome data collection including data from Human Microbiome... -
Multithread MyCC
Dear SeqAnswers community,
Can someone please tell me how to multithread MyCC? I don't see any options in the documentation. Not sure if... -
Training in Metagenomics Data Analysis @NIH, USA, Nov 7-10,2016
Hands-on Training in Metagenomics Data Analysis
November 7-10, 2016
Where
National Institutes of Health
9000 Rockville... -
EBI Metagenomics: How to analyze NCBI data?
Uploaded and public data from NCBI-SRA is mirrored and accessible at ENA (European Nucleotide Archive).
EBI Metagenomics is a pipeline that analyzes... -
Issue with FASTA header in QIIME
Dear all,
I have to analyze a set of 26 samples of 16S amplicon data, coming from 250 nt Paired-end Illumina Hi-Seq reads. When I received... -
Parsing a MEGAN file by command line
Hi, I have a quite large RMA file (about 40 GBs), and every time I try to open it, my (poor little) PC freezes. I was wondering if there's a way to parse... -
New metagenomics analysis platform: Nephele
I think many of you could benefit from using this new tool for Metagenomics data analysis (16S, ITS, WGS) created in NIAID/NIH.
Misner I, Dommer... -
Custom database for metagenomics
I am trying to analyze some environmental metagenomic samples. I would compare functional abundances between the samples for some genes of my interest,... -
Metagenomic contig binning and 16S with MyCC
I have tried to use MyCC (http://www.nature.com/articles/srep24175) on samples with varied diversity and I always get very good accuracy between number...
