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GSNAP output to IGV
I aligned Illumina reads to the zebrafish v9 reference genome using GSNAP. I had to build a new genome database in GSNAP/GMAP from individual fastA files... -
Pipelining "Samtools view" : invalid header in output .bam files
Hi,
I'm trying to filter properly paired and mapped reads from a BWA alignment using this command:
...Code:samtools view -hu -F4 bam_sorte
Last edited by fabfab; 04-02-2014, 12:25 AM. -
How to make .bam file to .bai file format under MS Window7 operating system?
Hello dear!
I have a illumina Miseq instrument, and have several data already aligned, that file format is .bam.
But I can't use Linux operating... -
.bam to .wig conversion
I'm trying do some sanity checks by putting my TopHat output on the UCSC browser. In order to do this, I need to convert my accepted_hits.bam files to... -
Software for variant frequency
Hello all,
I used to be able to use CLC for my SNP calling, which generates the reference base and the frequency of the variant allele...
