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Strange/erroneous TopHat output with paired-end data
Several members have noted strange bugs in the TopHat accepted_hits.sam file. One bug mentioned by many people (see here, here and here), is that the...
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Tophat: Is accepted_hits.sam normalized?
Hi,
I was wondering how accepted_hits.sam was calculated. Is it normalized in any way?
The reason I ask is that I want to...