Hi
I am aligning the paired exome sequencing data, that originated from
Sorted raw data bam file -->
Converted to fastq...
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Poor alignment rate by bowtie2 for exome sequence data
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library type for single end RNA-seq data
I searched lot of threads but didn't find any concrete answer.
I have single end RNA-seq data generated by on a Hi-Seq 2000 and I am not...Last edited by imsharmanitin; 06-30-2015, 10:15 AM. -
Filtering bowtie2 output sam file by mismatch number
Hi
I got a sam file output from bowtie2 by choosing option -N (setting number of mismatches allowed in a seed alignment during multis alignment)... -
Meaning of Negative Alignment Score in BOWTIE2 output
I have a mIRNA seq data in which I aligned it to whole genome UCSC hg19.
For that I use bowtie2 with the following parameter:
...Code:bowtie2
Last edited by foolishbrat; 01-29-2014, 01:13 AM.
