12 results in 0.0021 seconds.
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Artemis paired end illumina short read mapping won't display any "duplicate" reads
Hi! I'm working with Illumina paired end short reads fastq mapping using Artemis for a course I'm taking. While I'm able to get all SAM/BAM files without... -
How do you determine which a gene annotation is correct?
Using the program Artemis, I have to get the annotation of one specific gene. I then have to do a blast search on other databases (Ecocyc, KEGG, etc.)... -
BWA-GATK pipeline showing weird results upon visulisation
Dear All
I am a novice to NGS. My intention is to discover SNPs between two strains (virulent versus avirulent) in malaria. I mapped illumina... -
Viewing multiple BAM files in Artemis
Not a question - just found out how to do this and I don't think this is particularly well documented, so just posting this here to help other users.... -
merge gbk files
Hi all, this might sound stupid but I would like to know how to combine multiple genbank files into one continuous file. I tried using <cat> to... -
Annotation help
Hi,
This may be a series of extremely basic questions, but I’ve only had a little bioinformatics training. I am quickly running out... -
Artemis can't read my indel vcf file
I have got raw SNPs and INDELs in separate vcf files using GATK. I tried to view that on Artemis after uploading my embl and fasta reference file. Artemis... -
Annotation in GFF3
Hi,
Can anybody tell me a program to find genes by homology that generate GFF3?
I tired AAT but only show me a table... -
Annotation: Glimmer to GFF
Hi,
We tried to work with Glimmer for prokaryotes annotation, but we need a GFF format to load in Artemis.
anybody can tell me ... -
Exonerate GFF in Artemis
Hi,
May be this is very simple question, I'm beginner in bioinformatics.
I'm trying to run exonerate, I tested with a partial...Last edited by Daniel Fernandez; 06-06-2012, 10:00 AM. -
Problem mapping to multifasta reference file
Hi,
I mapped short reads (105*2) with BWA to reference genome having two chromosomes in the same file. Everything is fine, except when i load the... -
Getting MIRA alignments into Artemis
Hi, very new and inexperienced user here. I was thrown head-first into a genome-project, and am currently trying to figure out which programs to use to...
