Dear all, I've been trying to test if I can produce the same fusion call starting from BAM instead of FASQ. My STAR command is as such.
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BAM -> FASTQ why can I not produce the same result?
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BAM to FASTQ picard or samtools
This post has been cross posted and can be deleted.Last edited by anoopkmr; 08-10-2018, 06:48 AM.
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Bam quality vs read quality
I have a cancer bam file and want to check its read qualities. I have two options in mind.
1. Check bam quality through fastqc
2. Convert...
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Converting RNA-Seq bam in fastq
Hi everyone!
I have to convert some RNA-Seq bam files into corrensponding paired-end fastq files.
I tried to use "samtools view"...
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VCF to pseudo BAM
I've an odd question.
I'm working with a set of VCF files from multiple individuals in a population. However, there are a number of tools for population...
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casava 1.8 bam conversion to gatk bam
Am am trying to convert bam files generated via casava to bam files recognized by gatk...I have asked illumina but no solution yet. I am using casava...