7 results in 0.0028 seconds.
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bedtools - adding fields to bedpe files
Bedtools documentation states that one can add two extra fields to a bedpe file when using bamtobed. Does anyone know how to do that? I need to add the... -
bamToBed bedpe
Hi,
I m running bamToBed using bedtools/2.18.0.
When I use the -bedpe option, I am getting an incomplete file, in particular, of...Last edited by oursu; 03-29-2014, 07:21 PM. -
How does bedtools - bamToBed handle S operation in cigar string?
Hi,
I've been recently using bamToBed utility from the bedtools suite in order to transform the alignments in a BAM file into features... -
Bedtools bamToBed paired end problems
I have generated artificial sequences with Sherman and aligned them using bwa. I then used samtools to sort the read and generate a bam file.
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Changing the strand in a Bam/Sam file
My sequencing data has been generated using the dUTP method, which means that when viewed in IGV or other browsers the reads are shown as being in the... -
[cufflinks] every transcript is only one exon
I have a problem with cufflinks, all the transcripts which I assemble always consist of just one exon in the resulting GTF file!
I started... -
BEDtools v2.14.3 installation issue for OSX Lion? : bamToBed
I have successfully installed and used BEDtools v2 several times on OSX 10.6 machines. However, I'm on a new machine running OSX 10.7.2 and keep getting...
