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NicolaP · 08-28-2014, 12:40 AM

Hi!

I am trying to evaluate the performances of the short reads aligner we developed in my research group (bw-erne), and I came across...

JPreston · 04-08-2014, 01:05 PM

Hello,

I need to filter my SAM/BAM files to remove bases below a certain base quality (QUAL) threshold, eg. Q30. Does anybody know if there...

Comosus · 09-09-2012, 06:00 AM

I've been using the latest version of Bowtie2 to map 100 base Illumina reads for RNA-seq. I am also trimming 25 bases from the 3' end.

...

AlbertZANG · 06-06-2012, 04:03 PM

I'm using VarScan.v2.2.11.

The problem I'm reporting here is something about VarScan's parameter --min-avg-qual when using command mpileup2indel....

indapa · 06-28-2011, 08:09 AM

Hi,

I tried posting this question on GetStatisfaction GATK forum but kept getting an invalid request error in Firefox. I thought I would...

swapna · 02-23-2011, 04:36 AM

Hello,

I would like to understand the pileup base quality scores for SNPs.

For example, I have this SNP call at one of the...

Evaluation of short read aligners with base qualities