Hi,
I'm working on de novo assembly of an insect genome. Our paired-end libraries were made from 10 ng of sheared DNA using a Rubicon ThruPLEX...
4 results in 0.0056 seconds.
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No peak in BBNorm kmer-frequency histogram
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Introducing Tadpole: an assembler, error-corrector, and read-extender
Tadpole, a new BBTool, is an extremely fast kmer-based assembler. How fast is it? Around 250x faster than SPAdes with --careful (which is how we generally...Last edited by Brian Bushnell; 10-14-2015, 05:49 PM. -
Introducing BBNorm, a read normalization and error-correction tool
I'd like to introduce BBNorm, a member of the BBTools package.
BBNorm is a kmer-based normalization tool for NGS reads, which may also be...Last edited by Brian Bushnell; 01-29-2015, 09:47 AM. -
Introducing BBMap, a new short-read aligner for DNA and RNA
BBMap will be publicly released soon, pending confirmation with LBL's legal department.
In the meantime feel free to look at these graphs...Last edited by Brian Bushnell; 11-10-2014, 12:09 PM.