Hi,
Can someone explain the following phenomenon. I ran bcftools (bcftools call -v -c )on a pileup created by samtools. This resulted in...
6 results in 0.0021 seconds.
-
variant calling on a subsample of a BAM file..
-
SNP at every chromosome position
Hi,
I SOLiD sequencing data. After aligning with SHRiMP2, I used samtools mpileup for SNP calling:
samtools mpileup -C50... -
How to add both DP and DV format tags to a VCF file
Using samtools mpileup -D, (and bcftools view) I have been able to generate VCF files with the samples having the "DP" format tag. This appears... -
VCF info field code description
Hi all,
I have made some SNP calls using Samtools, following the SNP calling, using the BCFtools, I have been playing around with some different... -
BCFTOOLS 0.2 Filter problems
Hi all,
First post here, so I hope I am posting in the right place. I am trying to use BCFTOOLS (version: 0.2.0-rc8-10-g7a1041c) to filter a bcf...Last edited by simono101; 05-27-2014, 08:27 AM. -
Problem converting bcf to vcf
The bcf tools manual says that the default output is vcf so I expected the following command to produce a vcf file:
bcftools view 0000.bcf...
