Hi everyone!
I'm trying to find protein orthologs between strains using InParanoid.
But when I execute it, I obtain errors in <formatdb>...
7 results in 0.0022 seconds.
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InParanoid blastall and formatb ERROR
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tblastx in blast+ gives an error regareding a DB alias but blastall works fine
I'm trying to run `tblastx` locally. For this I created my own database using the command:
`makeblastdb -in all_seqs.fasta -dbtype nucl -title... -
couldn't find blastall in blast 2.2.29
I have used default blastall in Biolinux 7.0. However, when i turned to install latest blast 2.2.29 on local server, there's no blastall in the bin directory.... -
blastall blastx filter different hits on one contig
Dear all,
I performed a blastx of some thousand contigs of size between 1500 and 5000 bp against uniref-protein database. To speed it up... -
Blast Program Memory Usage
Dear Members,
I have compiled and installed blastall and using the same in cent os ver 6.0.
When I am running this, it consumes... -
BLASTp parameter -dbsize problems (blastall -z)
Hello all,
I'm stuck at a blastp problem. I want to use the parameter -dbsize to incrementally add sequences to a blast output. Same option is available...Last edited by fireLog2; 12-11-2013, 10:05 AM. -
Get query coverage using CLI blast
I'm running blastall locally but can not find an option to include query coverage in the output. How do I add query coverage to the blastall output?...
