Hi
I am trying SpliceMap for finding splicing in my reads. I have fastq formats (pair end- 2 files). I have reference genome in fasta...
6 results in 0.0031 seconds.
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bowtie2-build , How to use more CPU cores
When running "bowtie2-build" to build the index files it uses only one core. Is there any way to add option in order to use all 4 cores? Very... -
bowtie with humongous reference database
Hi all,
I have been trying to find a way to build bowtie2 index for a really large reference database (>100GB) but I keep running into... -
transcriptome_index Bowtie2 Index
Dear all,
As far as understand Tophat2 creates an transcriptome_index which also includes Bowtie2 Index files using GTF and the genome file.... -
Tophat Can't Find Bowtie2 Index!?!?!
Hi everyone,
So I am familiar with using tophat for alignment and I used it successfully a few weeks ago with the following command:
...Last edited by thickrick99; 08-12-2014, 07:58 PM. -
Bowtie2 for macintosh
Hi forum members:
I tried to work with bowtie2 in macintosh OS X 10.8.5, however, bowtie2 is not working. After following step by step the example...
