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BOWTIE2: How to randomly map a read to single alignment when read is multimapping?
I want to keep only one alignment per read, so if a read maps equally well to several locations, one location should be chosen at random. Could you help... -
250bp paired end Miseq reads alignment
Hello all
Recently we upgraded our miseq and got 2*250 run data. Does anyone have experience in aligning this sort of data? I have been... -
bowtie2 minimum score threshold
I am using bowtie2 version 2.0.0-beta7
A careful reading of the bowtie2 manual section for local alignments makes it sounds like the best...
