Hi,
Is there an equivalent of -m and -best for bowtie2? Does -m for the version lower than 2 remove alignments with the worse scores and leaves...
3 results in 0.0028 seconds.
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equivalent of -m -best with bowtie2
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how to report only 1 hit read by bowtie2?
in bowtie1 there is a parameter -m 1 to report only 1 hit read, how to do this in bowtie2? -
Bowtie2 output options
Hi guys,
I have been trying to write unaligned (--un path) and aligned (--al path) reads from a Bowtie2 (Bowtie2 2.0.0-beta7) alignment...
