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gwilymh started a topic How best to use --bflyHeapSpaceMax and --bflyGCThreads on Trinity

in Bioinformatics

05-13-2015, 01:56 PM
How best to use --bflyHeapSpaceMax and --bflyGCThreads on Trinity

I am currently using trinity v2.6.0. My jobs keep crashing at the butterfly stage of the analysis, with such error messages as:
succeeded(1008),...

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starbug16 started a topic Trinity RAM issue

in Bioinformatics

02-11-2014, 08:39 AM
Trinity RAM issue

Hi,

Having managed to whittle down my Illumina data to 31 million reads, I am trying to run Trinity with 16 CPUs and 16 gigabytes of RAM....

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