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juan started a topic Paired end reads: line # does not match

in Illumina (Solexa)

10-27-2010, 05:56 PM
Paired end reads: line # does not match

Hello,
I have a GAII paired-end run (seven lanes, run1 and run2 for each lane are the forward and reverse ends of a pair).

For 3...

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Seq1234 started a topic BWA 0.5 and 0.5.5 are in-compatible

in Bioinformatics

12-07-2009, 08:41 PM
BWA 0.5 and 0.5.5 are in-compatible

The alignments generated using 0.5.0 (.sai file)
gets corrupted when processed further using 0.5.5 version
for generating the .sam file....

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