Many papers in human genetics including published in this year have used bwa 0.5.9 for HiSeq reads mapping instead of upper versions.
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Why do human genome studies use bwa 0.5.9?
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why can't I get alignment with BWA?
What's the general steps to align a set of reads to ref?
Is the flowing right?
1.build index -> bwa index -c -a is ecoli.fa
2.convert...Last edited by gigigou; 09-06-2012, 05:54 AM. -
[bwt_restore_sa] SA-BWT inconsistency: seq_len is not the same. Abort!
Hi,
Was converting the .sai to .sam and saw this error:
...Code:[bwa_aln_core] convert to sequence coordinate... [bwt_restore_sa]
