Hello All,
I am relatively new to using BWA, and I am hoping to better understand the maximum edit distance parameter, -n. The manual says...
6 results in 0.0032 seconds.
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BWA aln maximum edit distance (-n)
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bwa - unrecognized command 'aln'
Hi,
I try to run bwa with se reads, but it seems that bew can't find the aln option.
This is my bwa version:
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BWA sai file is having different sizes for paired end
Hi all,
i am having a strange problem with BWA 0.5.9 windows version. When i processed paired end fq sequences to produce sai files they both are... -
Samtools mpileup
I am using samtools mpileup on my data.
I have used bwa for alignment of my NGS whole genome:
bwa sampe ref.fa read?.sai read?.fq.gz... -
BWA - XM tag Question
I have installed BWA. And build index of hg19 using command:
bwa index -a bwtsw hg19.fa
Now I find alignment using command:...Last edited by Arupsss; 06-28-2012, 06:51 AM. -
What are the default settings in bwa?
Hello,
If I understand correctly, the default setting of bwa aln - according to the homepage - is no seeding and max 4% mismatches over...
