Hi, I'm just looking for input from the SEQ community, has anyone tinkered with any of the parameters for
bwa sampe
e.g. -a, -n, -N
...
7 results in 0.0021 seconds.
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bwa sampe - playing with the parameters?
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BWA sai file is having different sizes for paired end
Hi all,
i am having a strange problem with BWA 0.5.9 windows version. When i processed paired end fq sequences to produce sai files they both are... -
BWA sampe malformed @RG line
Coming into work today code that was working all last week now is giving problems. I have fastq files, i align them using bwa aln then create sam files... -
BWA Reports High Mapping Quality for Poorly Mapped Pairs
I realized after I, serendipitously, ran "bwa sampe" on the same identical alignments (i.e. sai files from the same fastq) that the second mate... -
BWA sampe mapping result, what is "PROPER PAIR"?
I have been using Bwa to map paired end reads(illumina) recently and I thought i could use some of your help to get answers for some questions that I...Last edited by hl450; 07-29-2010, 08:03 AM. -
bwa sampe 0.5.7 error?
Hi all,
I have paired genomic data (75bp) that I have "aln"-ed and am attempting to "sampe"
Everthing... -
Why no multithreading for BWA sampe/samse?
BWA in the align mode (generating the indices of reads on chromosomes) has multiple threads as an option but doesn't seem to have this for generating...
