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sgroenewold started a topic BWASW doesn't complete

in Bioinformatics

01-21-2013, 09:48 AM
BWASW doesn't complete

I'm attempting to sequence 250bp reads from an Illumina MiSeq using BWA 0.6.2 on a 64-bit CentOS 6.2 virtual machine.

I previously had...

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robs started a topic CIGAR string from BWA-SW output incorrect ?

in Bioinformatics

06-22-2010, 04:48 PM
CIGAR string from BWA-SW output incorrect ?

I am quite happy with BWA-SW, except that it seems to generate incorrect CIGAR strings (and therefore incorrect SEQ fields) in the SAM output files. Maybe,...

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