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BLAT sequence versus different versions of same genome
I used the UCSC BLAT tool to align a canine EST (DN435215, 565 bases in length) to the current version of the dog genome (canfam3). Only the first 175...
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IndelRealigner ERROR
Whe I run IndelRealigner I get an ERROR like this. It is a whole screen of chrUn something, ending like this:
chrUn_AAEX03026059, chrUn_AAEX03026060,...
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EOF error in BAM file using canfam3
I have made BAM files using canfam3 as a reference.
Then I am getting this error when using picard/BuildBamIndex
Exception in...