7 results in 0.0074 seconds.
-
CD-HIT Doesn't report the total number of sequences correctly, any known fix?
I am using CD-HIT to reduce redundacy in a dataset of 20405 peptides, CD-HIT seem to work fine but it identifies only 18404 peptides as shown in the output... -
Removing redundancy from GenBank plasmid database using cd-hit-est
Hey all,
I have the following problem. I have a plasmid sequence database (ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/plasmid/) that is... -
Dedupe on assembled RNA-Seq?
Hi,
I am trying to get rid of "redundant" sequences from a trinity assembly. I used dedupe.sh to get rid of duplicates in the... -
low mapping efficiency of cd-hit-otu
Hi,
I have an Illumina paired-end data set of a couple million ITS-2 sequences. I am using cd-hit-otu to do chimera checking, merging the pairs,... -
CD-HIT-EST-2D Error: segmentation fault ('core' dumped)
Hello,
I am using CD-HIT-EST-2D in order to compare two contigs files in fasta format. I have been using it for several files and it worked... -
-M issues with CD-HIT
I was trying to merge two datasets in terminal using the CD-HIT function, but I'm getting a fatal error, requesting that I change the -M option greater... -
Retrieving sequences from CD-HIT clusters
I have run CD-HIT on a set of DNA sequences (171 million). Now they are nicely clustered in a file
... but how can I efficiently retrieve all DNA sequences...
