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savernake started a topic 100% reads passed chastity filtering?

in Bioinformatics

04-26-2016, 08:11 AM
100% reads passed chastity filtering?

Hi, folks.

I'm on my fist QC analyses and when filtering for failed chastity reads the program retuned that 100% of the reads passed the...

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danielsbrewer started a topic Filtering a BAM by chastity flag using samtools

in Bioinformatics

09-28-2011, 07:33 AM
Filtering a BAM by chastity flag using samtools

Dear all

I have a BAM file from Illumina whole genome data and I would like to filter out all the reads that fail Illumina's chastity...

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