Hey,
I've been working with some mouse faecal samples provided to me and was happy enough that they had been classified well by Centrifuge....
7 results in 0.0042 seconds.
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Centrifuge output question
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Protein classification
Hello,
I got a proteins from NGS scaffold DNA of Toxocara canis, de novo assembly, protein prediction using Augustus, local blastp. Attached... -
Classify sample based on RNAseq data and micro-array data
I have a sample on which I will perform RNAseq. I would like to compare its transcriptome to the transcriptomes of several cell types and find the cell... -
From GO terms to COG classification
Hello!
I need to classify a list of GO terms in COG categories but I don't know how to do that, in fact, I do not know if it is possible... -
Best classifier for viral reads--PhyloSift? BLAST? Others?
I'm trying to compare methods of classifying RNA and DNA virus reads from metagenomic sequeincing data. I've got MetAMOS set up, and I'm mainly interested... -
Megan for contig or gene classification
Hi SEQanswers experts,
I've used megan extensively to taxonomically classify reads from metagenomes which is, according to the initial... -
Identifying degradation products in smallRNASeq dataset
Hi all,
I am currently working with my first small RNA dataset (generated on Illumina GAII). The preprocessed dataset contains about 16...
