4 results in 0.0027 seconds.
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HUGE differences between multiple sequence aligners.
So I have 2000 sequences I am aligning to identify comonalities. Firstly I am using different MSA programs (clustalo, muscle and MAFFT) and then converting... -
MSA with 80,000 30bp seqences, provides 1500 base in output file
I have been trying to do a multiple sequence alignment with 80,000 sequences to identify any similarities. All bases are 36-37bp long however when I run... -
Compare 10000 sequences in hmmer
So I have used Clustal Omega to do a multiple alignment and hmmbuild to create a hmmer profile for 10000 copies of the same repeat region (30bp long)... -
ClustalO -> Why is distance matrix not quadratic?
I calculated a pairwise distance matrix in ClustalO. The distances are between 16s sequences after pairwise alignment.
The problem is,...
