Control-FREEC has an input for ploidy.
I wonder what is considered a better practice (ploidy=2 or ploidy=4) if I'm looking at a near-tetraploid...
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Control-FREEC, input for ploidy
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Paralleling Control-FREEC chromosome by chromosome
I'm wondering if anyone is an expert on Control-FREEC here.
I've used this config file to run Control-FREEC on a tumor-normal WGS data:... -
Copy number variation in cancer WGS
Hi guys,
I am looking at some whole genome sequencing (WGS) for tumor-normal pairs, and I want to find somatic copy number alteration... -
Trying to use OncoSNP-SEQ for CNV
Hi guys,
Does anyone have experience using OncoSNP-SEQ?
It's a somatic copy number alteration detector, geared toward tumor-normal... -
Control-FREEC: a tool for assessing copy number and allelic content using NGS data
Control-FREEC enables automatic calculation of copy number and allelic content profiles from next generation sequencing data, and consequently predicts...