Hi everyone,
I was wondering if anyone has experience working with GATK Germline CNV caller?
I am recently trying to work with this...
9 results in 0.0031 seconds.
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GATK Germline CNV caller
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Error FishingCNV_2.1
Hello everybody,
hope, someone has a solution for the following problem:
I want to establish FishingCNV for analysis of CNVs in... -
Recommendations for CNV calling algorithms/programs to benchmark
I want to benchmark the time/resource use and breakpoint accuracy of CNV callers on multiple individual NGS data at 30x-100x coverage at specific CNVs.... -
What are the best tools/practices for CNV detection/analysis?
I am looking for the current state-of-the-art tools/practices for CNV (structural variation) detection/analysis for family (trio) data produced by Illumina.... -
CNV detection with single-read data (bacterial genome)
I am planning to do a CNV calling for the first time and I've got Illumina single-read data (50bp). Libraries were not sequenced in paired-end because... -
CNV calling with BWA mem
Hi,
In my center we are interested in calling CNVs from targeted resequencing using Illumina's MiSeq and I am facing the following issue:... -
A new open source tool for structural variant discovery: RAPTR-SV
Hello everyone,
We are pleased to present a new tool for Structural Variant (SV) discovery using whole-genome, paired-end sequence data:... -
CNVkit: Copy number detection and visualization for targeted sequencing using off-tar
CNVkit is a software toolkit to infer and visualize copy number from targeted DNA sequencing data. It is designed for use with hybrid capture, including...Last edited by etal; 02-04-2015, 09:41 AM. -
ExomeDepth CNV detection
Hi all,
I have used ExomeDepth package for the detection of CNVs in my WES samples. All my samples show a number of CNVs of 130 on average,...
