Greetings,
I'm trying to run CNVnator on a cohort of ~300 BAM files.
For testing purposes I'm trying to run it on just...
9 results in 0.0041 seconds.
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Correct options for CNVnator
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CNVnator need help
I am using CNVnator recently, preparing to call CNV in a 200 samples with 6X average coverage population, here is the command I used:
cnvnator... -
CNVnator data for testing
Hello,
I am currently testing CNVnator as a method of CNV discovery. I am currently using for testing data from the 1000 Genomes pilot... -
CNV and Depth of coverage statistical method
Hi,
I have depth of coverage file generated by GATK having depth of coverage for 20 samples on each chromosome. I am interested in comparison between... -
CNVnator histogram run for too long
Hello!
It's my first time using CNVnator. After creating the .root file I did the following:
./cnvnator -root file.root -chrom... -
Run times with CNVnator
Hi,
If anyone has run CNVnator before for cnv detection can you give me an idea of the approximate run time for the steps?
... -
CNV core dump problem
HI I'm using CNVnator to do some CNV analysis but came across problems of core dump
Basically I first generated .root files from .bam files;... -
CNVnator: The format of cnv result
I know CNVnator has been used in 1000 Genomes Project. But there is little of material to explain the format of CNV result. Is there anyone know the format... -
couldn't run CNVnator
Hello,
Does anyone have experience with CNVnator?
It requires the ROOT package, and after two unsuccessful attempts I managed to install...
