Hello,
I am giving a general talk to a room of undergraduates soon. For it I will draw a 5-D (3-D plus color and size of points) graph...
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Platform Comparison Table
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Platform Comparison Table
Hello,
I am giving a general talk to a room of undergraduates soon. For it I will draw a 5-D (3-D plus color and size of points) graph... -
Control-based correction in multispecies RNAseq comparison
Hi all!
I think this issue fits better here than on another forum I posted this question some time ago:
In a multispecies... -
Comparison of NGS technologies
Hi All
This is my first post!
I am trying to get my head around the various RNA-sequencing platforms so I thought of doing... -
multifactor analysis or pairwise comparison?
I can't find a simple answer to what's the difference between doing multifactor analysis or pairwise comparisons, example:
I have two factors... -
16S vs shotgun
Have people done detailed comparisons of bacterial communities profiled using amplicon (e.g. 16S) versus shotgun sequencing? I know HMP has done this... -
Oligo Synthesis Companies/Services
Hi everyone!
I've had one person tell me that IDT is the go-to company for oligo synthesis. Why is this?
I've gotten... -
MG-RAST - Efficient downloads?
Hello,
I want to download the hierarchical SEED Subsystems information for 30 metagenomes at MG-RAST. I've managed to obtain, through the API,... -
Comparing metagenomes produces with different sequencing technologies
Hi all,
I would like to compare the abundance of my gene(s) of interest across many published metagenomes. Typically we would normalize... -
Comparing two ChIP-seq libraries
Hello,
I am new to ChIP-seq data mining (by myself) and I am having a hard time comparing two ChIP-seq data sets. Could you tell me if... -
SEQC consortium manuscripts in NBT
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
http://ww... -
Sampling for transcriptome analysis
Hi all,
I am going to do a transcriptome analysis of small scale S. cerevisiae fermentations using RNA-seq. I would like to get some feed-back... -
Viewing multiple BAM files in Artemis
Not a question - just found out how to do this and I don't think this is particularly well documented, so just posting this here to help other users.... -
Is Sanger better than Next-Gen for Anything?
Do you think there are any applications for which Sanger sequencing (i.e. capillary electrophoresis, CE) still holds a competitive advantage over Next-Gen... -
How to compare de novo and reference mappings in SNPs analysis?
Hello. I am a beginner in this field and I have a question, sorry if it is obvious !
In SNPs analysis (by Stacks software) with FASTQ sample...
