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CAGCAGCAGCAG started a topic DESeq2 model design + contrasts (not full rank)

in Bioinformatics

06-18-2020, 01:21 AM
DESeq2 model design + contrasts (not full rank)

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Last edited by CAGCAGCAGCAG; 06-19-2020, 01:02 AM.
CAGCAGCAGCAG started a topic DESeq2 model design + contrasts (not full rank)

in Bioinformatics

06-18-2020, 01:02 AM
DESeq2 model design + contrasts (not full rank)

Hi,

I'm new to this forum and I got a question doe DESeq2 concerning model design and contrast, because my model design is not full ranked....

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Boel started a topic DESeq2 multivariate analysis - retrieving certain stats

in Bioinformatics

09-28-2015, 11:23 AM
DESeq2 multivariate analysis - retrieving certain stats

Dear All,

I am running a DESeq2 within-subject treatment response analysis. I have RNA seq data on 75 individuals, for most of these I...

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wacguy started a topic edgeR contrast

in RNA Sequencing

09-15-2014, 01:02 PM
edgeR contrast

I've noticed that:

lrt <- glmLRT(fit, contrast=c(-1,1,0))

vs

lrt <- glmLRT(fit, contrast=c(1,-1,0))...

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