Hello,
Please note that I have posted this question on another website, but I did not receive any advice. I would really appreciate some...
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DESeq2: Contrasts in multifactor design with interaction terms
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Simple effects in DESeq2
Hello, this is probably a very simple point, but I want to make sure I understand this. In the DESeq2 ?results document it lists the following example...Last edited by ramiro2k; 05-16-2017, 08:42 AM. -
interactions with DESeq2 in a time-course analysis
Dear all,
we're having a time course data set of 8 TP (0, 16,24,30,48,72,90, and 100 hours).
We would like to test for genes which...Last edited by frymor; 11-05-2015, 03:21 AM. -
Advanced interaction contrast in DESeq2
Hi everyone,
I am currently working on some RNA-seq data in DESeq2 and I would like to know if I can transform a specific... -
EdgeR: Contrasts for both within and between subject comparison
I have two sets of samples, one set being sensitive to a compound treatment, the other resistant. For each group I have patient samples that were left... -
DESeq2 Contrasts
I am trying to do contrasts between 3 levels in a factor, and I am running the DESeq command in DESeq using the recommended betaPrior=FALSE argument....
