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About the Recalibration of Best Practice Variant Detection with GATK v3
I tried to follow the protocol of"Better: sample level realignment with known indels and recalibration" in "Best Practice Variant Detection... -
Missing dinucleotides after GATK CountCovariates
Hi all,
I have a weird problem in that I only see 4 dinucleotides in the GATK-CountCovariates result files for the dinucleotideCovariate... -
Bfast color space tag and GATK error
The Genome Analysis Toolkit 'CountCovariates' portion of the base quality recalibration tool utilizes platform information, and in the case of color space...
