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balthasar0810 started a topic ChIP-seq cross correlation

in Bioinformatics

07-24-2018, 05:19 AM
ChIP-seq cross correlation

Dear all,

sorry to bother you but I still do not get why there is a phantom peak for the read length in cross correlation analysis of NGS...

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metheuse started a topic Any way to remove background reads?

in Bioinformatics

02-05-2013, 08:28 AM
Any way to remove background reads?

Hi, I'm dealing with some ChIP-seq data which is quite noisy. MACS can only find less than 1k peaks. I checked its cross-correlation. The NSC is 1.02...

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