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sridhar28 started a topic How to identify the Up and down Regulated genes from Cuff diff output

in Bioinformatics

10-23-2013, 02:48 AM
How to identify the Up and down Regulated genes from Cuff diff output

Dear All,

How to identify the Up and down regulated genes from the diff genes, I got diffgenes using Cummerbund codes.

In my...

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Last edited by sridhar28; 10-23-2013, 08:00 AM. Reason: link not attached
Tomnl started a topic Changes between Cufflinks/Cuffdiff version 2.0.2 and version 2.1.1

in RNA Sequencing

09-24-2013, 01:06 AM
Changes between Cufflinks/Cuffdiff version 2.0.2 and version 2.1.1

Hey All

I have analysed some RNA-Seq data for a mouse genome with both Cufflinks/Cuffdiff version 2.0 and 2.1 and get quite different results....

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drKM started a topic Normalization methods in cuffdiff 2.02

in Bioinformatics

02-05-2013, 11:43 PM
Normalization methods in cuffdiff 2.02

Hi there,

I'm a newbie using cuffdiff.
Could anyone explain the three methods in cuffdiff to me?

1. raw-mapped-norm...

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