Hello folks,
I have an issue with Cuffquant v2.2.1, which fails to quantify the expression (create .cxb files) of the current RNA-seq I am...
5 results in 0.0020 seconds.
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Brainstorming: Error sources for Cuffquant failure: Map Mass: 0.00
Last edited by Thias; 07-22-2016, 02:33 AM. -
tophat->cufflinks->cuffdiff library type
Hi folks,
I am doing RNA-seq analysis using tophat->cufflink->duffdiff pipeline on a stranded dataset.
I ran tophat2... -
Cuffmerge outputs only exon annotation data
Hi,
I am analyzing RNA-Seq data to discover new genes, exons and polymorphic sites. I recently aligned the RNA of 7 different tissue samples... -
cufflinks -G vs cuffquant
I have a collection of bam files and a reference transcriptome (.gtf), and I want to generate expression levels that will be correlated with a phenotype.... -
Wierd issue with Cufflinks 2.2.0
Hi all,
I'm having issues with results from cuffnorm.
I had 4samples(R1-R4) with 3replicates each, so that's 12 PE fastqs
...
