Hi,
I try to use DEGseq to process my miRNA data which only have *.fasta file.
I used bowtie to alignment my 1.fa.txt and...
10 results in 0.0021 seconds.
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DEGseq
Hi,
I try to use DEGseq to process my miRNA data which only have *.fasta file.
I used bowtie to alignment my 1.fa and 2.fa... -
Problem with DEGseq/samWrapper
Hello guys,
Any help will be appreciated.
I am trying to use the function samWrapper from the new version of the DEGseq... -
Understanding Expression Analysis
Hello,
I am working on analyzing differential expression across several samples.
My data consists of 10 RNAseq libraries... -
DEGseq VS edgeR, which one is more reliable?
hi, there.
i am working on the RNA seq data analysis and i both use the R package DEGseq and edgeR to obtain DEGs .however, the DEG lists...Last edited by tianyub836; 10-09-2011, 05:04 PM. -
comparing results by cuffdiff, edgeR, DESeq
Has anyone tried to compare the results from the various tools that offers differential expression analyses for RNASEQ data?
I understand... -
microRNA analysis (no reference genome)
Hi everyone
We performed an RNA-seq experiment using small RNAs in a species with no genome sequence. I've used miRProf to find which microRNAs... -
Statistical comparison of more than two ChIP-seq experiments
I have a peaks × experiments matrix of tag counts from ChIP-seq experiments in several conditions (with replicates), and I want to know which peaks are... -
read counts per transcript, edgeR, tophat
Hi everyone,
I'm using Illumina RNAseq to test for differential expression between two conditions. I have successfully mapped reads with... -
DEGseq
Hey all,
A new package has come out for RNA Seq Analysis:
DEGseq: an R package for identifying differentially expressed...
