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Introduction
Hello peeps,
I am new to this forum and working on a html project. I like to explore food and beaches. I like to read and write as well.... -
How can I make a valid design for this data in DESeq2?
So I have a problem with a dataset I'm working on. Here is information about the samples.
Three viruses at three timepoints:
Virus1_day1,... -
Linear Combinations in DESeq2 design
Hello,
I have an RNAseq experiment where I am studying longterm effects from a pregnancy condition in mice. Although there are expression... -
Design matrix for edgeR help
Hi,
I am attempting to create a design matrix in edgeR to determine differentially expressed genes, but I am unsure on the notation to... -
DESeq2 paired data: "model is not full rank"
Dear all,
I have a question that is similar to others I've seen, but I am still not sure how to solve it.
Data is:
... -
discrepance in DESeq2 results with different design structures
Hi,
I am doing a DESeq2 analysis using a data set of nine different conditions/time-points.
I first ran the analysis with the complete... -
glm edgeR issue
Hi everybody
I just performed a time series analysis on edgeR and I have a question.
This is my data frame for the condition and time:... -
Statistical treatment of biological reps from pooled samples
Hi, I have a theoretical question. I know that it's important to do biological reps when doing differential expression RNA-seq experiments (3 seems to... -
DEXSeq for multi-factor design
I am using DEXSeq for testing differential exon usage between two conditions: control and treatment. For each condition, I have 8 biological replicates...Last edited by alittleboy; 06-26-2013, 05:16 PM. -
Experimental design with edgeR and DESeq packages
Hi everybody,
I just started using edgeR and DESeq and am looking for a confirmation that I am not doing a silly thing.
...
