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GATK RNA-Seq pathway Split 'n' Trim- problems with .bai and .fai index compatibility
I am processing aligned RNA-Seq data to get phased haplotypes of novel genes in sea stars. I am working through the analysis pipeline that used the Genome...Last edited by gwilymh; 11-17-2014, 06:03 PM. Reason: Specifying the specific part of the pipeline where I had the problem -
GATK: GenomeAnalysisTK.jar file
Hello all,
I’m nuclear about what should contain the GenomeAnalysisTK.jar file.
This is how the command line looks like:...
