Hi all.
After finish assemble fungus genome from pacbio sequel using SMRT link or Falcon assembler, the genome size is twice as much as I...
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Ploidy estimation or decision using pacbio sequel data
Last edited by yjpark1091; 04-22-2018, 11:01 PM. -
Recombination fraction estimation from VCF file
Hi,
Could you please suggest a good tool or script that is able to calculate recombination fraction (for haploid progeny of diploid parent)... -
cannot find heterozygous peak through kmer spectrum
I simulate a diploid genome using pIRS (1.5% snp) and generated 25X Illumina pair-end reads, but from the 25-mer spectrum, i did not find any heterozygous... -
Best methods for merging heterozygous contigs?
Greetings!
I'm dealing with an assembly from a diploid organism and am in the process of reducing it to a haploid assembly as much as I...Last edited by Nordic; 11-18-2014, 03:04 AM. -
Low frequency variant caller for any ploidy level
Hi all,
we've developed a generic, sensitive and fast method (quite a mouthful but it's true, see for yourself
) for prediction of very...
