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pooling reads for error correction
For error-correction of Illumina reads, is it a good idea to pool reads from several samples and do error correction on the pool, rather than individually?... -
Creating a gtf file for the database I mapped against
I used BWA-SOLiD from Galaxy, but had somewhat of a mapping failure with very little hits. It was kindly suggested to me by Jennifer of Galaxy:
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Error correcting Illumina raw reads -- necessary after trimming?
I've been trying to figure this one out for a little while. Most of the genomes that have been assembled using exclusively Illumina short PE reads (such...
