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Avinacode101 started a topic Blast to reference genome

in Bioinformatics

10-02-2014, 07:31 AM
Blast to reference genome

Hello!

I have a bit of a conundrum with Blast of all things. I have it locally installed on a Mac. I have individual fasta files of sequences...

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Godevil started a topic How to compare ESTs with assembled contigs of the genome?

in Complete Genomics

12-11-2011, 06:27 PM
How to compare ESTs with assembled contigs of the genome?

Hello,

I'm performing the genome assemlby, and I've already assembled reads into contigs. I want to compare ESTs with those contigs in...

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MadraghRua started a topic mapping transcriptome reads to assembled ESTs

in Bioinformatics

06-28-2011, 08:54 AM
mapping transcriptome reads to assembled ESTs

Hi Folks
I'm mapping single read colourspace reads from a plant transcriptome analysis to EST data. We don't have a genome, so EST data is what...

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