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JonB · 07-12-2014, 09:40 AM

Hi,

I have a gff3 file and I want to extract the gene sequences (not including introns). Several genes have many isoforms, but I want only...

toreoe · 04-14-2014, 08:55 AM

Hi everyone,

What I have:
A bam file with 10kb MP reads mapped back to an in house reference genome assembled in Allpaths-LG. Going...

kasthuri · 05-23-2013, 03:03 PM

This may be a simple question.

I am trying to extract CHR, POS, REF and ALT and other info from a VCF file to a txt file using vcftools....

cdias · 08-24-2012, 03:04 AM

Hello,

I need to extract reads from a bam file - for each genomic position, I need to extract a different number of reads.

...

pepperoni · 10-12-2011, 07:16 PM

Does anyone has a script to extract a subset of fastq sequences based on a list of IDs?
similar to the "choose_FASTAs_from_list" script...

f.pop · 08-10-2011, 05:40 AM

Hi,

I was wondering if someone could help me. I am trying to extract a compressed file (.fq.tar.gz) and I constantly get the following...

Kasycas · 07-15-2011, 01:48 AM

Hi,

Has anyone successfully extracted a subset of sequences by their read ID from an sff file? I'm trying to separate plasmid and chromosomal...

Extract gene sequences from gff3 file and reference fasta