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Fisher's exact test in RNA-Seq
In RNA-Seq analysis it is common to use tests analogous to Fisher's exact test to evaluate whether a gene is differentially expressed in two measured... -
how to build the contingency table
Hi all,
I have two lists of genes as follows:
- DEList has 282 gene names
- AllList has 32805 gene names
- DEList is a subset
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Contingency tests in R, Error with large numbers
I have been struggling to figure out how to fix this error, and I thought why not try the seqanswers community. I am fairly new to R though, so please... -
How to use Fisher's exact test in R
I have some RNA-seq data for statistic analysis. I do not have biological replicate for the data, so could anyone can give me some suggestion how to compare... -
Calculating p-values from FPKM?
Oof! I'm on the last leg of my first project here at UCLA in the Pellegrini Lab. I'm supposed to figure out which genes are differentially expressed (say,...
